R/mock.R
taxa_quants.Rd
Note that both arguments must be phyloseq objects from the phyloseq package.
taxa_quants(ps, ref, normalize = FALSE)
ps | A phyloseq object describing the measurements |
---|---|
ref | A phyloseq object describing the reference set. Can be obtained
from |
normalize | Whether to normalize taxa counts first. |
A data frame with the following columns:
The taxonomy level for the entry.
The taxonomy.
The sample name for the quantification.
The measured quantification.
The reference quantification.
NULL#> NULL