Downloads a complete data set from mockrobiota. — mockrobiota • mbtools

Downloads a complete data set from mockrobiota.

mockrobiota(name, folder, quiet = !interactive())

Arguments

name	Name of the mockrobiota data set.
folder	Where to save the data.
quiet	Whether to show download progress.

Value

A list with the following components

description: A description of the data set.
forward: Filepath to the forward reads.
reverse: Filepath to the reverse reads.
index: Filepath to the index file.
citation: Reference for the data set.
fragment: Which fragment(s) were sequenced.
equipment: The used sequencing equipment.
samples: A data frame mapping samples to barcodes.
ps_gg: The reference phyloseq object using the green genes taxonomy.
ps_silva: The reference phyloseq object using the silva taxonomy.

Examples

 NULL
#> NULL