Counts the reads for a specific taxonomy level.
taxa_count(ps, lev = "Genus", zeros = FALSE)
| ps | A phyloseq object. |
|---|---|
| lev | The taxonomy level at which to count. If NA uses the finest level available (individual sequences). |
| zeros | Whether to explicitly track zero counts. |
A mbquant data table containing the counts in "long" format.
NULL#> NULL