Get the quality profiles and base calls for each cycle across all input files.

quality_profile(files, n = 10000)

Arguments

files

A data table containing the files as returned by find_read_files.

n

How many reads to sample from each file. If a file has less all of them will be used.

Value

A list with two data tables giving the sampled metrics per cycle / base pair:

qualities

The quality scores for each cycle and sample.

bases

The base calls for each cycle and sample.