Workflow for basic quality assessment of the read files.
quality_control(object, min_score = 10, n = 10000)
| object | An experiment data table as returned by
|
|---|---|
| min_score | The smallest quality score still considered okayish. |
| n | Largest number of reads for each file. Will be sampled if more are found. |
A list with the following elements:
The input files to produce the report
data table of qualities scores per cycle and sample
data table of base calls per cycle and sample
sample quality profiles
distribution of cycles that pass the quality cutoff
sample base entropy