Plots counts for several taxa across a co-variable
plot_counts(ps, variable, tax_level = "genus", taxa = NULL, normalized = TRUE, pc = 0.5, only_data = FALSE)
| ps | A phyloseq data set. |
|---|---|
| variable | The name of the co-variable. |
| tax_level | The taxonomy level to use. Defaults to genus. |
| taxa | A character vector denoting the taxa to be plotted. Defaults to plotting all taxa. |
| normalized | Whether to normalize the counts using the DESeq2 size factors. |
| pc | The pseudo count to add. |
| only_data | Only get the raw data for the plot. |
Nothing.
NULL#> NULL